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1

Single-pot, solid-phase-enhanced sample preparation for proteomics experiments

Hughes, Christopher S., Moggridge, Sophie, Müller, Torsten, Sorensen, Poul H., Morin, Gregg B., Krijgsveld, Jeroen

Journal:

Nature Protocols

Year:

2018

Language:

english

File:

PDF, 2.03 MB

english, 2018

2

Selective enrichment of newly synthesized proteins for quantitative secretome analysis

Eichelbaum, Katrin, Winter, Markus, Diaz, Mauricio Berriel, Herzig, Stephan, Krijgsveld, Jeroen

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.10 MB

english, 2012

3

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Alfredo Castello, Bernd Fischer, Katrin Eichelbaum, Rastislav Horos, Benedikt M. Beckmann, Claudia Strein, Norman E. Davey, David T. Humphreys, Thomas Preiss, Lars M. Steinmetz, Jeroen Krijgsveld, Mat

Journal:

Year:

2012

Language:

english

File:

PDF, 1.39 MB

english, 2012

4

Proteomic Analysis of Stem Cell Differentiation and Early Development

van Hoof, D., Krijgsveld, J., Mummery, C.

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2012

Language:

english

File:

PDF, 636 KB

english, 2012

5

Cross-linking and characterisation of gelatin matrices for biomedical applications

Kuijpers, Alma J., Engbers, Gerard H. M., Krijgsveld, Jeroen, Zaat, Sebastian A. J., Dankert, Jacob, Feijen, Jan

Journal:

Journal of Biomaterials Science Polymer Edition

Year:

2000

Language:

english

File:

PDF, 300 KB

english, 2000

6

System-wide identification of RNA-binding proteins by interactome capture

Castello, Alfredo, Horos, Rastislav, Strein, Claudia, Fischer, Bernd, Eichelbaum, Katrin, Steinmetz, Lars M, Krijgsveld, Jeroen, Hentze, Matthias W

Journal:

Bioentrepreneur

Year:

2013

Language:

english

File:

PDF, 1.81 MB

english, 2013

7

Daily energy expenditure in precocial shorebird chicks: smaller species perform at higher levels

Karen L. Krijgsveld,Robert E. Ricklefs,G. Henk Visser

Journal:

Journal of Ornithology

Year:

2012

Language:

english

File:

PDF, 462 KB

english, 2012

8

Bifunctional Sphingosine for Cell-Based Analysis of Protein-Sphingolipid Interactions

Haberkant, Per, Stein, Frank, Höglinger, Doris, Gerl, Mathias J., Brügger, Britta, Van Veldhoven, Paul P., Krijgsveld, Jeroen, Gavin, Anne-Claude, Schultz, Carsten

Journal:

ACS Chemical Biology

Year:

2016

Language:

english

File:

PDF, 5.82 MB

english, 2016

9

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap

Castello, Alfredo, Frese, Christian K., Fischer, Bernd, Järvelin, Aino I, Horos, Rastislav, Alleaume, Anne-Marie, Foehr, Sophia, Curk, Tomaz, Krijgsveld, Jeroen, Hentze, Matthias W

Journal:

Nature Protocols

Year:

2017

Language:

english

File:

PDF, 2.61 MB

english, 2017

10

Predicting bird collisions with wind turbines: Comparison of the new empirical Flux Collision Model with the SOSS Band model

Kleyheeg-Hartman, J.C., Krijgsveld, K.L., Collier, M.P., Poot, M.J.M., Boon, A.R., Troost, T.A., Dirksen, S.

Journal:

Ecological Modelling

Year:

2018

Language:

english

File:

PDF, 310 KB

english, 2018

11

Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring

Cagnetta, Roberta, Wong, Hovy Ho-Wai, Frese, Christian K., Mallucci, Giovanna R., Krijgsveld, Jeroen, Holt, Christine E.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.91 MB

english, 2018

12

In vivo compatibility and degradation of crosslinked gelatin gels incorporated in knitted Dacron

A. J. Kuijpers, P. B. van Wachem, M. J. A. van Luyn, J. A. Plantinga, G. H. M. Engbers, J. Krijgsveld, S. A. J. Zaat, J. Dankert, J. Feijen

Journal:

Journal of Biomedical Materials Research Part B: Applied Biomaterials

Year:

2000

Language:

english

File:

PDF, 736 KB

english, 2000

13

Recent liquid chromatographic–(tandem) mass spectrometric applications in proteomics

Edwin P Romijn, Jeroen Krijgsveld, Albert J.R Heck

Journal:

Journal of Chromatography A

Year:

2003

Language:

english

File:

PDF, 494 KB

english, 2003

14

In vitro and in vivo evaluation of gelatin–chondroitin sulphate hydrogels for controlled release of antibacterial proteins

A.J Kuijpers, P.B van Wachem, M.J.A van Luyn, L.A Brouwer, G.H.M Engbers, J Krijgsveld, S.A.J Zaat, J Dankert, J Feijen

Journal:

Year:

2000

Language:

english

File:

PDF, 4.42 MB

english, 2000

15

Lung proteome alterations in a mouse model for nonallergic asthma

René Houtman, Jeroen Krijgsveld, Mirjam Kool, Edwin P. Romijn, Frank A. Redegeld, Frans P. Nijkamp, Albert J. R. Heck, Ian Humphery-Smith

Journal:

Year:

2003

Language:

english

File:

PDF, 334 KB

english, 2003

16

A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells

Wilma Dormeyer, Dennis van Hoof, Christine L. Mummery, Jeroen Krijgsveld, Albert J. R. Heck

Journal:

Year:

2008

Language:

english

File:

PDF, 572 KB

english, 2008

17

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing

Sharon Gauci, Bas van Breukelen, Simone M. Lemeer, Jeroen Krijgsveld, Albert J. R. Heck

Journal:

Year:

2008

Language:

english

File:

PDF, 455 KB

english, 2008

18

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses

David B. Friedman, Tracy M. Andacht, Maureen K. Bunger, Allis S. Chien, David H. Hawke, Jeroen Krijgsveld, William S. Lane, Kathryn S. Lilley, Michael J. MacCoss, Robert L. Moritz, Robert E. Settlage,

Journal:

Year:

2011

Language:

english

File:

PDF, 741 KB

english, 2011

19

On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics

Ioana M. Taban Barbu, Donald F. Smith, Bas van Breukelen, Yuri E. M. van der Burgt, Marc C. Duursma, Albert. J. R. Heck, Ron M. A. Heeren, Jeroen Krijgsveld

Journal:

Rapid Communications in Mass Spectrometry

Year:

2010

Language:

english

File:

PDF, 114 KB

english, 2010

20

Novel Hsp90 partners discovered using complementary proteomic approaches

Pavel A. Tsaytler, Jeroen Krijgsveld, Soenita S. Goerdayal, Stefan Rüdiger, Maarten R. Egmond

Journal:

Cell Stress and Chaperones

Year:

2009

Language:

english

File:

PDF, 243 KB

english, 2009

21

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics

Krijgsveld, Jeroen, Ketting, René F, Mahmoudi, Tokameh, Johansen, Janik, Artal-Sanz, Marta, Verrijzer, C Peter, Plasterk, Ronald H A, Heck, Albert J R

Journal:

Nature Biotechnology

Year:

2003

Language:

english

File:

PDF, 466 KB

english, 2003

22

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

Van Hoof, Dennis, Pinkse, Martijn W H, Oostwaard, Dorien Ward-Van, Mummery, Christine L, Heck, Albert J R, Krijgsveld, Jeroen

Journal:

Year:

2007

Language:

english

File:

PDF, 207 KB

english, 2007

23

Nonprocessive methylation by Dot1 leads to functional redundancy of histone H3K79 methylation states

Frederiks, Floor, Tzouros, Manuel, Oudgenoeg, Gideon, van Welsem, Tibor, Fornerod, Maarten, Krijgsveld, Jeroen, van Leeuwen, Fred

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 497 KB

english, 2008

24

GATA-1 forms distinct activating and repressive complexes in erythroid cells

Rodriguez, Patrick, Bonte, Edgar, Krijgsveld, Jeroen, Kolodziej, Katarzyna E, Guyot, Boris, Heck, Albert J R, Vyas, Paresh, de Boer, Ernie, Grosveld, Frank, Strouboulis, John

Journal:

The EMBO Journal

Year:

2005

Language:

english

File:

PDF, 316 KB

english, 2005

25

Feeder-Free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile

Dennis Van Hoof, Stefan R. Braam, Wilma Dormeyer, Dorien Ward-van Oostwaard, Albert J.R. Heck, Jeroen Krijgsveld, Christine L. Mummery

Journal:

Year:

2008

Language:

english

File:

PDF, 951 KB

english, 2008

26

Mass Spectrometric Analysis of the Schistosoma mansoni Tegumental Sub-proteome

van Balkom, Bas W. M., van Gestel, Renske A., Brouwers, Jos F. H. M., Krijgsveld, Jeroen, Tielens, Aloysius G. M., Heck, Albert J. R., van Hellemond, Jaap J.

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 340 KB

english, 2005

27

Characterization of the Network Structure of Carbodiimide Cross-Linked Gelatin Gels

Kuijpers, A. J., Engbers, G. H. M., Feijen, J., De Smedt, S. C., Meyvis, T. K. L., Demeester, J., Krijgsveld, J., Zaat, S. A. J., Dankert, J.

Journal:

Year:

1999

Language:

english

File:

PDF, 235 KB

english, 1999

28

Proteome biology of stem cells

Albert J.R. Heck, Christine Mummery, Anthony Whetton, Steve Oh, Bonghee Lee, Martin Pera, Ihor Lemischka, Jeroen Krijgsveld

Journal:

Stem Cell Research

Year:

2007

Language:

english

File:

PDF, 148 KB

english, 2007

29

Proteomics and human embryonic stem cells

Dennis Van Hoof, Albert J.R. Heck, Jeroen Krijgsveld, Christine L. Mummery

Journal:

Stem Cell Research

Year:

2008

Language:

english

File:

PDF, 782 KB

english, 2008

30

Searching for proteins of Mycobacterium avium subspecies paratuberculosis with diagnostic potential by comparative qualitative proteomic analysis of mycobacterial tuberculins

Wiebren Santema, Marije Overdijk, Judith Barends, Jeroen Krijgsveld, Victor Rutten, Ad Koets

Journal:

Veterinary Microbiology

Year:

2009

Language:

english

File:

PDF, 331 KB

english, 2009

31

In vivo and in vitro release of lysozyme from cross-linked gelatin hydrogels: a model system for the delivery of antibacterial proteins from prosthetic heart valves

A.J Kuijpers, P.B van Wachem, M.J.A van Luyn, G.H.M Engbers, J Krijgsveld, S.A.J Zaat, J Dankert, J Feijen

Journal:

Journal of Controlled Release

Year:

2000

Language:

english

File:

PDF, 267 KB

english, 2000

32

Controlled delivery of antibacterial proteins from biodegradable matrices

Alma J Kuijpers, Gerard H.M Engbers, Pauline B van Wachem, Jeroen Krijgsveld, Sebastian A.J Zaat, Jacob Dankert, Jan Feijen

Journal:

Journal of Controlled Release

Year:

1998

Language:

english

File:

PDF, 253 KB

english, 1998

33

In-Gel Isoelectric Focusing of Peptides as a Tool for Improved Protein Identification

Krijgsveld, Jeroen, Gauci, Sharon, Dormeyer, Wilma, Heck, Albert J. R.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 320 KB

english, 2006

34

Proteiomics of Biological Systems: Protein Phosphorylation Using Mass Spectrometry Techniques. By Bryan M. Ham.

Jeroen Krijgsveld

Journal:

Year:

2012

Language:

english

File:

PDF, 137 KB

english, 2012

35

Novel binding partners of Ldb1 are required for haematopoietic development

Natalia Meier, Sanja Krpic, Patrick Rodriguez, John Strouboulis, Maria Monti, Jeroen Krijgsveld, Martin Gering, Roger Patient, Arnd Hostert, Frank Grosveld

Journal:

Blood Cells, Molecules, and Diseases

Year:

2007

Language:

english

File:

PDF, 57 KB

english, 2007

36

GMP Synthetase Stimulates Histone H2B Deubiquitylation by the Epigenetic Silencer USP7

Jan A. van der Knaap, B.R. Prashanth Kumar, Yuri M. Moshkin, Karin Langenberg, Jeroen Krijgsveld, Albert J.R. Heck, François Karch, C. Peter Verrijzer

Journal:

Year:

2005

Language:

english

File:

PDF, 629 KB

english, 2005

37

The Time Is Right: Proteome Biology of Stem Cells

Anthony D. Whetton, Andrew J.K. Williamson, Jeroen Krijgsveld, Bong Hee Lee, Ihor Lemischka, Steve Oh, Martin Pera, Christine Mummery, Albert J.R. Heck

Journal:

Year:

2008

Language:

english

File:

PDF, 94 KB

english, 2008

38

Phosphorylation Dynamics during Early Differentiation of Human Embryonic Stem Cells

Dennis Van Hoof, Javier Muñoz, Stefan R. Braam, Martijn W.H. Pinkse, Rune Linding, Albert J.R. Heck, Christine L. Mummery, Jeroen Krijgsveld

Journal:

Year:

2009

Language:

english

File:

PDF, 1.85 MB

english, 2009

39

Foraging behavior and physiological changes in precocial quail chicks in response to low temperatures

K.L. Krijgsveld, G.H. Visser, S. Daan

Journal:

Physiology & Behavior

Year:

2003

Language:

english

File:

PDF, 506 KB

english, 2003

40

Quantitative proteomics by metabolic labeling with stable isotopes

Jeroen Krijgsveld, Albert J.R. Heck

Journal:

Drug Discovery Today: TARGETS

Year:

2004

Language:

english

File:

PDF, 117 KB

english, 2004

41

Identification of Cell Surface Proteins for Antibody-Based Selection of Human Embryonic Stem Cell-Derived Cardiomyocytes

Van Hoof, Dennis, Dormeyer, Wilma, Braam, Stefan R., Passier, Robert, Monshouwer-Kloots, Jantine, Ward-van Oostwaard, Dorien, Heck, Albert J. R., Krijgsveld, Jeroen, Mummery, Christine L.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.71 MB

english, 2010

42

Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish

Huang, Hsin-Yi, Houwing, Saskia, Kaaij, Lucas J T, Meppelink, Amanda, Redl, Stefan, Gauci, Sharon, Vos, Harmjan, Draper, Bruce W, Moens, Cecilia B, Burgering, Boudewijn M, Ladurner, Peter, Krijgsveld,

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 1.77 MB

english, 2011

43

Developments in quantitative mass spectrometry for the analysis of proteome dynamics

Christopher Hughes, Jeroen Krijgsveld

Journal:

Trends in Biotechnology

Year:

2012

Language:

english

File:

PDF, 670 KB

english, 2012

44

MASS SPECTROMETRIC IDENTIFICATION OF HUMAN PROSTATE CANCER-DERIVED PROTEINS IN SERUM OF XENOGRAFT-BEARING MICE

G.J. Van Den Bemd, J. Krijgsveld, T. Luider, J. Demmers, G. Jenster

Journal:

European Urology Supplements

Year:

2006

Language:

english

File:

PDF, 45 KB

english, 2006

45

503 SEARCH FOR HUMAN PROSTATE CANCER BIOMARKERS IN SERUM OF XENOGRAFT-BEARING MICE

F. Jansen, J. Krijgsveld, G.J. Van Den Bernd, A. Van Rijswijk, J. Demmers, G. Jenster

Journal:

European Urology Supplements

Year:

2007

Language:

english

File:

PDF, 318 KB

english, 2007

46

PROSTATE CANCER-DERIVED EXOSOMES AS NOVEL BIOMARKER TREASURE CHESTS

F.H. Jansen, J. Krijgsveld, R. Willemsen, T.M. Luider, A. Van Rijswijk, G. Jenster

Journal:

European Urology Supplements

Year:

2008

Language:

english

File:

PDF, 69 KB

english, 2008

47

Highly Coordinated Proteome Dynamics during Reprogramming of Somatic Cells to Pluripotency

Hansson, Jenny, Rafiee, Mahmoud Reza, Reiland, Sonja, Polo, Jose M., Gehring, Julian, Okawa, Satoshi, Huber, Wolfgang, Hochedlinger, Konrad, Krijgsveld, Jeroen

Journal:

Year:

2012

Language:

english

File:

PDF, 3.05 MB

english, 2012

48

Lys-N and Trypsin Cover Complementary Parts of the Phosphoproteome in a Refined SCX-Based Approach

Gauci, Sharon, Helbig, Andreas O., Slijper, Monique, Krijgsveld, Jeroen, Heck, Albert J. R., Mohammed, Shabaz

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 343 KB

english, 2009

49

Origin of monocytes and macrophages in a committed progenitor

Hettinger, Jan, Richards, David M, Hansson, Jenny, Barra, Melanie M, Joschko, Ann-Cathrin, Krijgsveld, Jeroen, Feuerer, Markus

Journal:

Nature Immunology

Year:

2013

Language:

english

File:

PDF, 2.26 MB

english, 2013

50

The RNA-binding protein repertoire of embryonic stem cells

Kwon, S Chul, Yi, Hyerim, Eichelbaum, Katrin, Föhr, Sophia, Fischer, Bernd, You, Kwon Tae, Castello, Alfredo, Krijgsveld, Jeroen, Hentze, Matthias W, Kim, V Narry

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

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